3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
7UQZ|1|1|G|3116, 7UQZ|1|1|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UQZ_062 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.136
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

7UQZ|1|1|C|3110
7UQZ|1|1|U|3111
7UQZ|1|1|G|3112
7UQZ|1|1|A|3113
7UQZ|1|1|A|3114
7UQZ|1|1|C|3115
7UQZ|1|1|G|3116
7UQZ|1|1|C|3117
7UQZ|1|1|C|3118
7UQZ|1|1|U|3119
7UQZ|1|1|C|3120
7UQZ|1|1|U|3121
7UQZ|1|1|A|3122
7UQZ|1|1|A|3123
7UQZ|1|1|G|3124

Current chains

Chain 1
25S rRNA

Nearby chains

Chain H
60S ribosomal protein L9-A
Chain O
60S ribosomal protein L16-A
Chain W
Ribosome assembly factor MRT4
Chain r
Ribosome biogenesis protein NSA2

Coloring options:


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