HL_7UQZ_068

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7UQZ|1|2|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_068 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.162

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7UQZ|1|2|G|124
7UQZ|1|2|U|125
7UQZ|1|2|A|126
7UQZ|1|2|U|127
7UQZ|1|2|U|128
7UQZ|1|2|C|129

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53