HL_7UQZ_069
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGUCCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQZ_069 not in the Motif Atlas
- Geometric match to HL_5TBW_185
- Geometric discrepancy: 0.1591
- The information below is about HL_5TBW_185
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_83767.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
7UQZ|1|3|C|36
7UQZ|1|3|G|37
7UQZ|1|3|U|38
7UQZ|1|3|C|39
7UQZ|1|3|C|40
7UQZ|1|3|G|41
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- rRNA-processing protein
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
Coloring options: