HL_7UQZ_078

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

7UQZ|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_078 not in the Motif Atlas

Homologous match to HL_8CRE_038

Geometric discrepancy: 0.3975

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UQZ|1|1|A|1760
7UQZ|1|1|C|1761
7UQZ|1|1|C|1762
7UQZ|1|1|U|1763
7UQZ|1|1|U|1764
7UQZ|1|1|U|1765

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

Probable metalloprotease ARX1

Chain R

60S ribosomal protein L19-A

Chain b

Nucleolar GTP-binding protein 1