HL_7UVW_002

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GCGGCAAAUAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVW_002 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3647

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7UVW|1|A|G|93
7UVW|1|A|C|94
7UVW|1|A|G|95
7UVW|1|A|G|96
7UVW|1|A|C|97
7UVW|1|A|A|98
7UVW|1|A|A|99
7UVW|1|A|A|100
7UVW|1|A|U|101
7UVW|1|A|A|102
7UVW|1|A|U|103
7UVW|1|A|C|104

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23

Chain T

50S ribosomal protein L24

Chain X

50S ribosomal protein L29