HL_7V08_029

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

UUGAUG

Length

6 nucleotides

Bulged bases

7V08|1|1|U|1348, 7V08|1|1|G|1354, 7V08|1|1|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_029 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.236

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7V08|1|1|U|1347
7V08|1|1|U|1348
7V08|1|1|G|1354
7V08|1|1|A|1355
7V08|1|1|U|1356
7V08|1|1|G|1357

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain E

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L18-A