HL_7V08_032

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7V08|1|1|G|1507, 7V08|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.0865

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7V08|1|1|A|1506
7V08|1|1|G|1507
7V08|1|1|C|1508
7V08|1|1|A|1509
7V08|1|1|G|1510
7V08|1|1|U|1511
7V08|1|1|U|1512

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain b

Nucleolar GTP-binding protein 1