3D structure

PDB id
7V08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.36 Å

Loop

Sequence
GUUAUCUUU
Length
9 nucleotides
Bulged bases
7V08|1|1|U|1687
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7V08_037 not in the Motif Atlas
Homologous match to HL_8C3A_037
Geometric discrepancy: 0.1906
The information below is about HL_8C3A_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7V08|1|1|G|1680
7V08|1|1|U|1681
7V08|1|1|U|1682
7V08|1|1|A|1683
7V08|1|1|U|1684
7V08|1|1|C|1685
7V08|1|1|U|1686
7V08|1|1|U|1687
7V08|1|1|U|1688

Current chains

Chain 1
25S rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain U
60S ribosomal protein L22-A
Chain b
Nucleolar GTP-binding protein 1
Chain u
Ribosome biogenesis protein RLP24

Coloring options:


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