3D structure

PDB id
7V08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.36 Å

Loop

Sequence
AGAAAGU
Length
7 nucleotides
Bulged bases
7V08|1|1|G|2169
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7V08_047 not in the Motif Atlas
Homologous match to HL_8C3A_047
Geometric discrepancy: 0.0821
The information below is about HL_8C3A_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7V08|1|1|A|2164
7V08|1|1|G|2165
7V08|1|1|A|2166
7V08|1|1|A|2167
7V08|1|1|A|2168
7V08|1|1|G|2169
7V08|1|1|U|2170

Current chains

Chain 1
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain G
RPL8A isoform 1
Chain N
60S ribosomal protein L15-A

Coloring options:


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