HL_7V08_052

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

7V08|1|1|A|2674, 7V08|1|1|A|2678, 7V08|1|1|A|2679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_052 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2961

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7V08|1|1|A|2673
7V08|1|1|A|2674
7V08|1|1|C|2675
7V08|1|1|A|2676
7V08|1|1|G|2677
7V08|1|1|A|2678
7V08|1|1|A|2679
7V08|1|1|A|2680
7V08|1|1|U|2681

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L11-A