HL_7V08_053

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

7V08|1|1|A|2696, 7V08|1|1|G|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_053 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2844

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7V08|1|1|C|2693
7V08|1|1|A|2694
7V08|1|1|A|2695
7V08|1|1|A|2696
7V08|1|1|A|2697
7V08|1|1|G|2698
7V08|1|1|G|2699
7V08|1|1|G|2700

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain v

Ribosome production factor 2 homolog