HL_7V08_062
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7V08|1|1|G|3116, 7V08|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7V08_062 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1281
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
7V08|1|1|C|3110
7V08|1|1|U|3111
7V08|1|1|G|3112
7V08|1|1|A|3113
7V08|1|1|A|3114
7V08|1|1|C|3115
7V08|1|1|G|3116
7V08|1|1|C|3117
7V08|1|1|C|3118
7V08|1|1|U|3119
7V08|1|1|C|3120
7V08|1|1|U|3121
7V08|1|1|A|3122
7V08|1|1|A|3123
7V08|1|1|G|3124
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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