HL_7V08_075

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

7V08|1|1|A|2222

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_075 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.352

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7V08|1|1|A2M|2220
7V08|1|1|G|2221
7V08|1|1|A|2222
7V08|1|1|A|2223
7V08|1|1|A|2224
7V08|1|1|U|2225

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A