HL_7V2M_008

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2M_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1209

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7V2M|1|A|C|316
7V2M|1|A|A|317
7V2M|1|A|C|318
7V2M|1|A|U|319
7V2M|1|A|G|320
7V2M|1|A|A|321
7V2M|1|A|G|322
7V2M|1|A|A|323
7V2M|1|A|C|324
7V2M|1|A|A|325
7V2M|1|A|C|326
7V2M|1|A|G|327
7V2M|1|A|G|328
7V2M|1|A|G|329

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20