HL_7V2M_011

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7V2M|1|A|U|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2M_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1297

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7V2M|1|A|C|415
7V2M|1|A|U|416
7V2M|1|A|U|417
7V2M|1|A|C|418
7V2M|1|A|G|419
7V2M|1|A|G|420

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain W

Ribosomal RNA small subunit methyltransferase A