HL_7V2M_013

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2M_013 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2404

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7V2M|1|A|C|506
7V2M|1|A|A|507
7V2M|1|A|G|508
7V2M|1|A|C|509
7V2M|1|A|C|510
7V2M|1|A|G|511

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12