HL_7V2N_018

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

7V2N|1|A|U|823, 7V2N|1|A|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2N_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.1814

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7V2N|1|A|G|822
7V2N|1|A|U|823
7V2N|1|A|C|824
7V2N|1|A|U|825
7V2N|1|A|C|826

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2