HL_7V2O_030

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

7V2O|1|A|A|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_030 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.4453

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7V2O|1|A|C|1430
7V2O|1|A|U|1431
7V2O|1|A|A|1432
7V2O|1|A|C|1433
7V2O|1|A|G|1434
7V2O|1|A|G|1435

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20