HL_7V2P_010

3D structure

PDB id

7V2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2P_010 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.0742

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7V2P|1|A|C|375
7V2P|1|A|G|376
7V2P|1|A|C|377
7V2P|1|A|A|378
7V2P|1|A|A|379
7V2P|1|A|G|380

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16