HL_7V2P_031

3D structure

PDB id

7V2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

7V2P|1|A|G|1494, 7V2P|1|A|G|1495, 7V2P|1|A|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2P_031 not in the Motif Atlas

Geometric match to HL_4ZLD_001

Geometric discrepancy: 0.3566

The information below is about HL_4ZLD_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7V2P|1|A|C|1493
7V2P|1|A|G|1494
7V2P|1|A|G|1495
7V2P|1|A|A|1496
7V2P|1|A|A|1497
7V2P|1|A|G|1498

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain U

Ribosomal RNA small subunit methyltransferase A