HL_7V2Q_023

3D structure

PDB id

7V2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2Q_023 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.332

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7V2Q|1|A|C|1008
7V2Q|1|A|C|1009
7V2Q|1|A|G|1010
7V2Q|1|A|C|1011
7V2Q|1|A|G|1012
7V2Q|1|A|A|1013
7V2Q|1|A|G|1014
7V2Q|1|A|G|1015

Current chains

Chain A

16s ribosomal RNA

Nearby chains