HL_7V59_007

3D structure

PDB id

7V59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of spyCas9-sgRNA-DNA dimer

Experimental method

ELECTRON MICROSCOPY

Resolution

5.26 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V59_007 not in the Motif Atlas

Homologous match to HL_5B2T_003

Geometric discrepancy: 0.23

The information below is about HL_5B2T_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7V59|1|G|U|90
7V59|1|G|G|91
7V59|1|G|A|92
7V59|1|G|A|93
7V59|1|G|A|94
7V59|1|G|A|95

Current chains

Chain G

RNA (115-MER)

Nearby chains

Chain E

CRISPR-associated endonuclease Cas9/Csn1