HL_7VW3_002

3D structure

PDB id

7VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SaCas9-sgRNA-DNA ternary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

7VW3|1|B|U|66

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7VW3_002 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.3151

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7VW3|1|B|C|61
7VW3|1|B|A|62
7VW3|1|B|A|63
7VW3|1|B|A|64
7VW3|1|B|A|65
7VW3|1|B|U|66
7VW3|1|B|G|67

Current chains

Chain B

single-guide RNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9