HL_7WTL_016

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAAAC

Length

7 nucleotides

Bulged bases

7WTL|1|C2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTL_016 not in the Motif Atlas

Geometric match to HL_7EQJ_004

Geometric discrepancy: 0.2739

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7WTL|1|C2|G|703
7WTL|1|C2|C|704
7WTL|1|C2|U|705
7WTL|1|C2|A|706
7WTL|1|C2|A|733
7WTL|1|C2|A|734
7WTL|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains