HL_7WTL_024

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTL_024 not in the Motif Atlas

Geometric match to HL_6UFG_004

Geometric discrepancy: 0.1007

The information below is about HL_6UFG_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7WTL|1|C2|A|1084
7WTL|1|C2|G|1085
7WTL|1|C2|A|1086
7WTL|1|C2|A|1087
7WTL|1|C2|A|1088
7WTL|1|C2|U|1089

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S22-A