HL_7WTN_005

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTN_005 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2863

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7WTN|1|C2|C|230
7WTN|1|C2|U|231
7WTN|1|C2|U|232
7WTN|1|C2|C|233
7WTN|1|C2|G|234
7WTN|1|C2|G|235

Current chains

Chain C2

18S rRNA

Nearby chains