HL_7WTO_019

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7WTO|1|C2|U|830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_019 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.2371

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

7WTO|1|C2|A|829
7WTO|1|C2|U|830
7WTO|1|C2|U|831
7WTO|1|C2|U|832
7WTO|1|C2|U|833
7WTO|1|C2|G|834
7WTO|1|C2|U|835
7WTO|1|C2|U|836
7WTO|1|C2|G|837
7WTO|1|C2|G|838
7WTO|1|C2|U|839
7WTO|1|C2|U|840
7WTO|1|C2|U|841
7WTO|1|C2|C|842
7WTO|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A