HL_7WTO_025

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_025 not in the Motif Atlas

Geometric match to HL_1Q96_001

Geometric discrepancy: 0.0975

The information below is about HL_1Q96_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7WTO|1|C2|C|1121
7WTO|1|C2|G|1122
7WTO|1|C2|C|1123
7WTO|1|C2|A|1124
7WTO|1|C2|A|1125
7WTO|1|C2|G|1126

Current chains

Chain C2

18S rRNA

Nearby chains