HL_7WTP_016

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAAAC

Length

7 nucleotides

Bulged bases

7WTP|1|C2|A|706

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTP_016 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3364

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7WTP|1|C2|G|703
7WTP|1|C2|C|704
7WTP|1|C2|U|705
7WTP|1|C2|A|706
7WTP|1|C2|A|733
7WTP|1|C2|A|734
7WTP|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains