HL_7WTP_022

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7WTP|1|C2|A|1005, 7WTP|1|C2|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTP|1|C2|G|997
7WTP|1|C2|A|998
7WTP|1|C2|U|999
7WTP|1|C2|C|1000
7WTP|1|C2|A|1001
7WTP|1|C2|G|1002
7WTP|1|C2|A|1003
7WTP|1|C2|U|1004
7WTP|1|C2|A|1005
7WTP|1|C2|C|1006
7WTP|1|C2|C|1007

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SO

40S ribosomal protein S14-A