HL_7WTP_023

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

7WTP|1|C2|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTP_023 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.329

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7WTP|1|C2|U|1055
7WTP|1|C2|U|1056
7WTP|1|C2|U|1057
7WTP|1|C2|U|1058
7WTP|1|C2|U|1059
7WTP|1|C2|U|1060
7WTP|1|C2|A|1061
7WTP|1|C2|A|1062
7WTP|1|C2|U|1063
7WTP|1|C2|G|1064

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain Sb

40S ribosomal protein S27-A