HL_7WTQ_002

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUACAG

Length

9 nucleotides

Bulged bases

7WTQ|1|C2|A|76, 7WTQ|1|C2|U|77

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTQ_002 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.12

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7WTQ|1|C2|C|70
7WTQ|1|C2|A|71
7WTQ|1|C2|A|72
7WTQ|1|C2|A|76
7WTQ|1|C2|U|77
7WTQ|1|C2|A|78
7WTQ|1|C2|C|79
7WTQ|1|C2|A|80
7WTQ|1|C2|G|81

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A