HL_7WTQ_016

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUAAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTQ_016 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2455

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7WTQ|1|C2|G|703
7WTQ|1|C2|C|704
7WTQ|1|C2|U|705
7WTQ|1|C2|A|706
7WTQ|1|C2|A|733
7WTQ|1|C2|A|734
7WTQ|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains