HL_7WTQ_030

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

7WTQ|1|C2|A|1781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTQ_030 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3784

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7WTQ|1|C2|G|1777
7WTQ|1|C2|G|1778
7WTQ|1|C2|U|1779
7WTQ|1|C2|G|1780
7WTQ|1|C2|A|1781
7WTQ|1|C2|A|1782
7WTQ|1|C2|C|1783
7WTQ|1|C2|C|1784

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SO

40S ribosomal protein S14-A