HL_7WTS_016

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7WTS|1|2|U|887, 7WTS|1|2|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTS_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3018

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7WTS|1|2|C|884
7WTS|1|2|U|885
7WTS|1|2|A|886
7WTS|1|2|U|887
7WTS|1|2|U|888
7WTS|1|2|U|889
7WTS|1|2|U|890
7WTS|1|2|G|891
7WTS|1|2|U|892
7WTS|1|2|U|893
7WTS|1|2|G|894
7WTS|1|2|G|895
7WTS|1|2|U|896
7WTS|1|2|U|897
7WTS|1|2|U|898
7WTS|1|2|U|899
7WTS|1|2|C|900
7WTS|1|2|G|901
7WTS|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S11