HL_7WTS_021

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTS_021 not in the Motif Atlas

Geometric match to HL_6CU1_002

Geometric discrepancy: 0.1068

The information below is about HL_6CU1_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7WTS|1|2|G|1141
7WTS|1|2|G|1142
7WTS|1|2|A|1143
7WTS|1|2|A|1144
7WTS|1|2|A|1145
7WTS|1|2|C|1146

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

U3 small nucleolar RNA-associated protein 14 homolog A

Chain W

40S ribosomal protein S15a

Chain z

Ribosome biogenesis protein SLX9 homolog