HL_7WTT_011

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTT_011 not in the Motif Atlas

Geometric match to HL_5M0I_002

Geometric discrepancy: 0.1342

The information below is about HL_5M0I_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7WTT|1|2|C|539
7WTT|1|2|U|540
7WTT|1|2|U|541
7WTT|1|2|U|542
7WTT|1|2|C|543
7WTT|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein