HL_7WTT_032

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7WTT|1|2|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTT_032 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.3587

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7WTT|1|2|G|1366
7WTT|1|2|U|1367
7WTT|1|2|U|1368
7WTT|1|2|A|1369
7WTT|1|2|A|1370
7WTT|1|2|U|1371
7WTT|1|2|U|1372
7WTT|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein