HL_7WTW_012

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTW_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1467

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTW|1|2|A|569
7WTW|1|2|C|570
7WTW|1|2|U|571
7WTW|1|2|U|572
7WTW|1|2|U|573
7WTW|1|2|A|574
7WTW|1|2|A|575
7WTW|1|2|A|576
7WTW|1|2|U|577
7WTW|1|2|C|578
7WTW|1|2|C|579
7WTW|1|2|U|580
7WTW|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24

Chain u

Pre-rRNA-processing protein TSR1 homolog