HL_7WTW_027

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

7WTW|1|2|G|1567

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTW_027 not in the Motif Atlas

Geometric match to HL_6UFH_004

Geometric discrepancy: 0.1942

The information below is about HL_6UFH_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7WTW|1|2|C|1565
7WTW|1|2|G|1566
7WTW|1|2|G|1567
7WTW|1|2|C|1568
7WTW|1|2|A|1569
7WTW|1|2|G|1570

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19