HL_7WTX_011

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7WTX|1|2|C|502, 7WTX|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTX_011 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1469

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7WTX|1|2|C|498
7WTX|1|2|G|499
7WTX|1|2|A|500
7WTX|1|2|C|501
7WTX|1|2|C|502
7WTX|1|2|C|503
7WTX|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain Y

40S ribosomal protein S24