HL_7WTX_020

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTX_020 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3414

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7WTX|1|2|G|1054
7WTX|1|2|A|1055
7WTX|1|2|U|1056
7WTX|1|2|C|1057
7WTX|1|2|A|1058
7WTX|1|2|G|1059
7WTX|1|2|A|1060
7WTX|1|2|U|1061
7WTX|1|2|A|1062
7WTX|1|2|C|1063
7WTX|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1