HL_7WTZ_023

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7WTZ|1|2|C|1247, 7WTZ|1|2|U|1248, 7WTZ|1|2|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTZ_023 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3645

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7WTZ|1|2|G|1245
7WTZ|1|2|A|1246
7WTZ|1|2|C|1247
7WTZ|1|2|U|1248
7WTZ|1|2|C|1249
7WTZ|1|2|A|1250
7WTZ|1|2|A|1251
7WTZ|1|2|C|1252
7WTZ|1|2|A|1253
7WTZ|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog