HL_7XAM_002

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUCAACCGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_002 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.4195

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

7XAM|1|A|U|84
7XAM|1|A|G|85
7XAM|1|A|U|86
7XAM|1|A|C|87
7XAM|1|A|A|88
7XAM|1|A|A|89
7XAM|1|A|C|90
7XAM|1|A|C|91
7XAM|1|A|G|92
7XAM|1|A|A|93

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29