HL_7XAM_015

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

7XAM|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1038

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7XAM|1|A|G|498
7XAM|1|A|G|499
7XAM|1|A|A|500
7XAM|1|A|C|501
7XAM|1|A|C|502
7XAM|1|A|A|503
7XAM|1|A|C|504
7XAM|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15