HL_7XAM_031

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7XAM|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_031 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2862

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|C|1182
7XAM|1|A|U|1183
7XAM|1|A|U|1184
7XAM|1|A|A|1185
7XAM|1|A|G|1186
7XAM|1|A|A|1187
7XAM|1|A|A|1188
7XAM|1|A|G|1189
7XAM|1|A|C|1190
7XAM|1|A|A|1191
7XAM|1|A|G|1192

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16