HL_7XAM_035

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_035 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.132

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7XAM|1|A|G|1396
7XAM|1|A|U|1397
7XAM|1|A|G|1398
7XAM|1|A|A|1399
7XAM|1|A|G|1400
7XAM|1|A|A|1401
7XAM|1|A|A|1402
7XAM|1|A|C|1403
7XAM|1|A|C|1404

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32