HL_7XAM_038

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7XAM|1|A|U|1511, 7XAM|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_038 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1082

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7XAM|1|A|G|1504
7XAM|1|A|U|1505
7XAM|1|A|U|1506
7XAM|1|A|G|1507
7XAM|1|A|A|1508
7XAM|1|A|U|1509
7XAM|1|A|A|1510
7XAM|1|A|U|1511
7XAM|1|A|U|1512
7XAM|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23