HL_7XAM_040

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

7XAM|1|A|G|1674, 7XAM|1|A|U|1675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_040 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5763

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7XAM|1|A|U|1671
7XAM|1|A|C|1672
7XAM|1|A|A|1673
7XAM|1|A|G|1674
7XAM|1|A|U|1675
7XAM|1|A|G|1676
7XAM|1|A|G|1677
7XAM|1|A|U|1678
7XAM|1|A|A|1679
7XAM|1|A|A|1680
7XAM|1|A|U|1681
7XAM|1|A|A|1682

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17