HL_7XAM_044

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

7XAM|1|A|A|1832, 7XAM|1|A|A|1834, 7XAM|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_044 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0898

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7XAM|1|A|C|1830
7XAM|1|A|A|1831
7XAM|1|A|A|1832
7XAM|1|A|C|1833
7XAM|1|A|A|1834
7XAM|1|A|C|1835
7XAM|1|A|A|1836
7XAM|1|A|G|1837

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34